Publications & Presentations

Lustig, Brooke S

Publications & Presentations

Selected Publications/Proceedings at SJSU

Huynh , A. T., Nguyen, T.-T. N., Villegas. C. A., Montemorso, S., Strauss, B., Graham, J. G., Oribello, J. O., Suresh, R., Lustig, B. & Wang, N. Prediction and Confirmation of a Switch-like Region within the N-terminal Domain of hSIRT1. Biochem. Biophys. Rep. 30, 101275 (1-7).
Available online May 19, 2022 ( 

Kimura, T., Yasuo, N., Sekijima, M. and Lustig, B. “Statistical potentials for RNA-protein interactions optimized by CMA-ES” (2022) J. Mol. Graph. Model. 110, 108044(1-10). Available online October 7, 2021 (

Nepal, R., Spencer, J., Bhogal, G., Nedunuri, A., Poelman, T., Kamath, T., Chung, E., Kantardjieff, K., Gottlieb, A. and Lustig, B. “Logistic Regression Models to Predict Solvent Accessible Residues Using Sequence and Homology-Based Qualitative and Quantitative Descriptors Applied to a Domain-Complete X-ray Structure Learning Set” (2015) J. Appl. Crystallog. 48, 1976-1984.

Rose, D., Nepal, R., Mishra, R., Lau, R., Gholizadeh, S. and Lustig, B. “Novel application of query-based qualitative predictors for characterization of solvent accessible residues in conjunction with protein sequence homology” (2011) Proceedings of the 22nd International Workshop on Database and Expert Systems Applications, 70-74.

Liao, H., Yeh, W., Chiang, D., Jernigan, R. L. and Lustig, B. “Protein sequence entropy is closely related to packing density and hydrophobicity” (2005) Prot. Engr. 18, 59-64.

Wander, D. S., Yang, F., McNeil, M and Lustig, B. “Scoring DNA sequence alignment using energetics of hybridization” (2003) Proceedings of Annual Meeting of American Institute of Chemical Engineers T2/555b(1-8).

Hsieh, M., Collins, E. D., Blomquist, T. and Lustig, B. "Flexibility of BIV TAR-Tat: Models of peptide binding" (2002) J. Biomol. Struct. Dyn. 20, 243-251.

Lustig, B. and Jeang K.-T. "Biological applications of hammerhead ribozymes as anti-viral molecules" (2001) Current Medicinal Chemistry 8, 1181-1187.

Lustig, B., Bahar, I. and Jernigan, R. L. "RNA bulge entropies correlate with peptide binding strengths for HIV-1 and BIV TAR RNA because of improved conformational access" (1998) Nucleic Acids Res. 26, 5212-5217.

Lustig, B., Arora, S. and Jernigan, R. L. "RNA base-amino acid interaction strengths derived from structures and sequences" (1997) Nucleic Acids Res. 25, 2562-2565.

Lustig, B. and Jernigan, R. L. "Consistencies of individual DNA base-amino acid interactions in structures and sequences" (1995) Nucleic Acids Res. 23, 4707-4711.

Other Selected Publications

Lustig, B., Lin, N. H., Smith, S. M., Jernigan, R. L. and Jeang, K.-T. "A small modified hammerhead ribozyme and its conformational characteristics determined by mutagenesis and lattice calculation" (1995) Nucleic Acids Res. 23, 3531-3538.

Lustig, B., Covell, D. G. and Jernigan, R. L. "Conformations of t-RNA: Base pairing and stacking" (1994) J. Biomol. Struct. Dyn. 12, 145-161.

Lustig, B. and Fink, A. L. "Secondary structure formation precedes tertiary structure in the refolding of ribonuclease A" (1992) Biochim. Biophys. Acta. 1121, 229-233.

Lustig, B. and Fink, A. L. "The thermal denaturation of ribonuclease A in aqueous methanol solvents" (1992) Biochim. Biophys. Acta. 1119, 205-210.

Fink, A. L., Anderson, W. D., Hattersly, J. E. and Lustig, B. "The effect of methanol and temperature on the kinetics of refolding of ribonuclease A" (1988) FEBS Lettr. 236, 190-194.